Detailed information of SNP:
|
SNP ID:
sf0502669469(Gbrowse)
Chromosome: chr05 Position: 2669469 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 69.65% | 30.35% |
| All Indica | 797 | 50.06% | 49.94% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 50.67% | 49.33% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 209 | 44.50% | 55.50% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502669469 | G->A | INTERGENIC | None |