Detailed information of SNP:
|
SNP ID:
sf0502914513(Gbrowse)
Chromosome: chr05 Position: 2914513 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 86.58% | 13.42% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 418 | 59.33% | 40.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 277 | 43.68% | 56.32% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 54 | 74.07% | 25.93% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502914513 | T->C | INTERGENIC | None |