Detailed information of SNP:
SNP ID:
sf0502963041(Gbrowse)
Chromosome: chr05 Position: 2963041 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1390 | 94.82% | 5.18% |
All Indica | 771 | 91.05% | 8.95% |
All Japonica | 497 | 99.80% | 0.20% |
Aus | 66 | 100.00% | 0.00% |
Indica I | 358 | 83.52% | 16.48% |
Indica II | 209 | 99.04% | 0.96% |
Indica Intermediate | 204 | 96.08% | 3.92% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0502963041 | G->A | LOC_Os05g05900(LOC_Os05g05900.1) | Non-Synonymous SNP |