Detailed information of SNP:



SNP ID: sf0502963041(Gbrowse)

Chromosome: chr05

Position: 2963041
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1390 94.82% 5.18%
All Indica771 91.05% 8.95%
All Japonica497 99.80% 0.20%
Aus66 100.00% 0.00%
Indica I358 83.52% 16.48%
Indica II209 99.04% 0.96%
Indica Intermediate204 96.08% 3.92%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0502963041 G->A LOC_Os05g05900(LOC_Os05g05900.1) Non-Synonymous SNP