Detailed information of SNP:
|
SNP ID:
sf0502983554(Gbrowse)
Chromosome: chr05 Position: 2983554 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 65.72% | 34.28% |
| All Indica | 787 | 96.95% | 3.05% |
| All Japonica | 492 | 17.48% | 82.52% |
| Aus | 51 | 49.02% | 50.98% |
| Indica I | 371 | 98.11% | 1.89% |
| Indica II | 210 | 94.29% | 5.71% |
| Indica Intermediate | 206 | 97.57% | 2.43% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 92 | 76.09% | 23.91% |
| Japonica Intermediate | 65 | 12.31% | 87.69% |
| Group VI/Aromatic | 9 | 44.44% | 55.56% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502983554 | A->C | INTERGENIC | None |