Detailed information of SNP:
|
SNP ID:
sf0503021879(Gbrowse)
Chromosome: chr05 Position: 3021879 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1174 | 64.74% | 35.26% |
| All Indica | 606 | 39.27% | 60.73% |
| All Japonica | 460 | 96.96% | 3.04% |
| Aus | 58 | 82.76% | 17.24% |
| Indica I | 258 | 47.29% | 52.71% |
| Indica II | 176 | 29.55% | 70.45% |
| Indica Intermediate | 172 | 37.21% | 62.79% |
| Temperate Japonica | 318 | 99.37% | 0.63% |
| Tropical Japonica | 79 | 86.08% | 13.92% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 36 | 63.89% | 36.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503021879 | A->G | INTERGENIC | None |