Detailed information of SNP:
|
SNP ID:
sf0503050434(Gbrowse)
Chromosome: chr05 Position: 3050434 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1214 | 97.45% | 2.55% |
| All Indica | 628 | 95.86% | 4.14% |
| All Japonica | 491 | 100.00% | 0.00% |
| Aus | 45 | 91.11% | 8.89% |
| Indica I | 302 | 96.69% | 3.31% |
| Indica II | 169 | 94.08% | 5.92% |
| Indica Intermediate | 157 | 96.18% | 3.82% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503050434 | A->C | INTERGENIC | None |