Detailed information of SNP:
|
SNP ID:
sf0503062514(Gbrowse)
Chromosome: chr05 Position: 3062514 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 80.27% | 19.73% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 470 | 45.32% | 54.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 310 | 24.84% | 75.16% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503062514 | T->C | INTERGENIC | None |