Detailed information of SNP:
|
SNP ID:
sf0503080013(Gbrowse)
Chromosome: chr05 Position: 3080013 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 68.22% | 31.78% |
| All Indica | 796 | 51.26% | 48.74% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 64.00% | 36.00% |
| Indica II | 213 | 38.03% | 61.97% |
| Indica Intermediate | 208 | 41.83% | 58.17% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503080013 | G->A | INTERGENIC | None |