Detailed information of SNP:
|
SNP ID:
sf0503083630(Gbrowse)
Chromosome: chr05 Position: 3083630 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 71.79% | 28.21% |
| All Indica | 798 | 52.51% | 47.49% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 39.30% | 60.70% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503083630 | A->G | INTERGENIC | None |