Detailed information of SNP:
|
SNP ID:
sf0503163526(Gbrowse)
Chromosome: chr05 Position: 3163526 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 71.43% | 28.57% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 479 | 23.80% | 76.20% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 29.64% | 70.36% |
| Tropical Japonica | 89 | 8.99% | 91.01% |
| Japonica Intermediate | 56 | 12.50% | 87.50% |
| Group VI/Aromatic | 8 | 37.50% | 62.50% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503163526 | C->A | INTERGENIC | None |