Detailed information of SNP:
|
SNP ID:
sf0503166036(Gbrowse)
Chromosome: chr05 Position: 3166036 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 98.50% | 1.50% |
| All Indica | 791 | 97.85% | 2.15% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 56 | 92.86% | 7.14% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 208 | 98.08% | 1.92% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503166036 | G->A | INTERGENIC | None |