Detailed information of SNP:
|
SNP ID:
sf0503338579(Gbrowse)
Chromosome: chr05 Position: 3338579 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 90.18% | 9.82% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 434 | 73.96% | 26.04% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 290 | 73.45% | 26.55% |
| Tropical Japonica | 83 | 92.77% | 7.23% |
| Japonica Intermediate | 61 | 50.82% | 49.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503338579 | C->T | LOC_Os05g06480(LOC_Os05g06480.1) | INTRON |