Detailed information of SNP:
|
SNP ID:
sf0503349177(Gbrowse)
Chromosome: chr05 Position: 3349177 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 90.40% | 9.60% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 495 | 74.14% | 25.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 73.27% | 26.73% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503349177 | T->C | LOC_Os05g06510(LOC_Os05g06510.2) | UTR_3_PRIME |
| sf0503349177 | T->C | LOC_Os05g06510(LOC_Os05g06510.1) | UTR_3_PRIME |