Detailed information of SNP:
|
SNP ID:
sf0503366114(Gbrowse)
Chromosome: chr05 Position: 3366114 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 93.42% | 6.58% |
| All Indica | 794 | 94.33% | 5.67% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 371 | 93.80% | 6.20% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503366114 | G->A | INTERGENIC | None |