Detailed information of SNP:
|
SNP ID:
sf0503396039(Gbrowse)
Chromosome: chr05 Position: 3396039 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1324 | 89.27% | 10.73% |
| All Indica | 707 | 82.89% | 17.11% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 319 | 77.43% | 22.57% |
| Indica II | 196 | 88.27% | 11.73% |
| Indica Intermediate | 192 | 86.46% | 13.54% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503396039 | G->A | INTERGENIC | None |