Detailed information of SNP:
|
SNP ID:
sf0503402979(Gbrowse)
Chromosome: chr05 Position: 3402979 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 91.99% | 8.01% |
| All Indica | 755 | 86.09% | 13.91% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 367 | 98.37% | 1.63% |
| Indica II | 191 | 68.06% | 31.94% |
| Indica Intermediate | 197 | 80.71% | 19.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503402979 | C->A | INTERGENIC | None |