Detailed information of SNP:
|
SNP ID:
sf0503485473(Gbrowse)
Chromosome: chr05 Position: 3485473 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 93.93% | 6.07% |
| All Indica | 783 | 89.78% | 10.22% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 97.04% | 2.96% |
| Indica II | 210 | 87.14% | 12.86% |
| Indica Intermediate | 201 | 79.10% | 20.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503485473 | C->T | INTERGENIC | None |