Detailed information of SNP:
|
SNP ID:
sf0503490423(Gbrowse)
Chromosome: chr05 Position: 3490423 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 94.33% | 5.67% |
| All Indica | 792 | 90.40% | 9.60% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 211 | 87.68% | 12.32% |
| Indica Intermediate | 208 | 80.29% | 19.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503490423 | T->C | LOC_Os05g06700(LOC_Os05g06700.2) | INTRON |
| sf0503490423 | T->C | LOC_Os05g06700(LOC_Os05g06700.1) | INTRON |