Detailed information of SNP:



SNP ID: sf0503490423(Gbrowse)

Chromosome: chr05

Position: 3490423
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1412 94.33% 5.67%
All Indica792 90.40% 9.60%
All Japonica497 100.00% 0.00%
Aus67 95.52% 4.48%
Indica I373 97.59% 2.41%
Indica II211 87.68% 12.32%
Indica Intermediate208 80.29% 19.71%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0503490423 T->C LOC_Os05g06700(LOC_Os05g06700.2) INTRON
sf0503490423 T->C LOC_Os05g06700(LOC_Os05g06700.1) INTRON