Detailed information of SNP:
|
SNP ID:
sf0503604431(Gbrowse)
Chromosome: chr05 Position: 3604431 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 52.45% | 47.55% |
| All Indica | 774 | 89.15% | 10.85% |
| All Japonica | 495 | 1.01% | 98.99% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 363 | 91.46% | 8.54% |
| Indica II | 208 | 87.02% | 12.98% |
| Indica Intermediate | 203 | 87.19% | 12.81% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503604431 | C->T | INTERGENIC | None |