Detailed information of SNP:
|
SNP ID:
sf0503608463(Gbrowse)
Chromosome: chr05 Position: 3608463 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1250 | 87.52% | 12.48% |
| All Indica | 652 | 88.80% | 11.20% |
| All Japonica | 493 | 96.15% | 3.85% |
| Aus | 65 | 15.38% | 84.62% |
| Indica I | 320 | 96.56% | 3.44% |
| Indica II | 160 | 83.12% | 16.87% |
| Indica Intermediate | 172 | 79.65% | 20.35% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 9 | 44.44% | 55.56% |
| Intermediate | 31 | 87.10% | 12.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503608463 | A->T | LOC_Os05g06890(LOC_Os05g06890.1) | INTRON |