Detailed information of SNP:
|
SNP ID:
sf0503683270(Gbrowse)
Chromosome: chr05 Position: 3683270 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.31% | 46.69% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 212 | 83.49% | 16.51% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503683270 | G->T | LOC_Os05g07020(LOC_Os05g07020.1) | INTRON |