Detailed information of SNP:
|
SNP ID:
sf0503689320(Gbrowse)
Chromosome: chr05 Position: 3689320 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.53% | 46.47% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503689320 | G->T | INTERGENIC | None |