Detailed information of SNP:
|
SNP ID:
sf0503822697(Gbrowse)
Chromosome: chr05 Position: 3822697 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1321 | 92.81% | 7.19% |
| All Indica | 708 | 86.86% | 13.14% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 322 | 81.99% | 18.01% |
| Indica II | 195 | 89.74% | 10.26% |
| Indica Intermediate | 191 | 92.15% | 7.85% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503822697 | C->T | INTERGENIC | None |