Detailed information of SNP:
|
SNP ID:
sf0503827292(Gbrowse)
Chromosome: chr05 Position: 3827292 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 70.78% | 29.22% |
| All Indica | 799 | 90.36% | 9.64% |
| All Japonica | 481 | 33.89% | 66.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 323 | 14.55% | 85.45% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 65 | 63.08% | 36.92% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503827292 | T->C | INTERGENIC | None |