Detailed information of SNP:
|
SNP ID:
sf0503840927(Gbrowse)
Chromosome: chr05 Position: 3840927 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 57.66% | 42.34% |
| All Indica | 799 | 88.86% | 11.14% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503840927 | T->C | LOC_Os05g07260(LOC_Os05g07260.1) | INTRON |
| sf0503840927 | T->C | LOC_Os05g07260(LOC_Os05g07260.3) | INTRON |
| sf0503840927 | T->C | LOC_Os05g07260(LOC_Os05g07260.2) | INTRON |
| sf0503840927 | T->C | LOC_Os05g07260(LOC_Os05g07260.4) | INTRON |