Detailed information of SNP:
|
SNP ID:
sf0503927478(Gbrowse)
Chromosome: chr05 Position: 3927478 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1294 | 94.67% | 5.33% |
| All Indica | 777 | 100.00% | 0.00% |
| All Japonica | 399 | 82.96% | 17.04% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 363 | 100.00% | 0.00% |
| Indica II | 206 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 245 | 74.29% | 25.71% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 62 | 93.55% | 6.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503927478 | T->C | INTERGENIC | None |