Detailed information of SNP:
|
SNP ID:
sf0503966001(Gbrowse)
Chromosome: chr05 Position: 3966001 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 91.00% | 9.00% |
| All Indica | 793 | 85.12% | 14.88% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 371 | 77.09% | 22.91% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503966001 | G->A | INTERGENIC | None |