Detailed information of SNP:
|
SNP ID:
sf0503973727(Gbrowse)
Chromosome: chr05 Position: 3973727 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 52.90% | 47.10% |
| All Indica | 799 | 28.54% | 71.46% |
| All Japonica | 494 | 98.38% | 1.62% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 30.13% | 69.87% |
| Indica II | 213 | 31.92% | 68.08% |
| Indica Intermediate | 211 | 22.27% | 77.73% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0503973727 | A->G | INTERGENIC | None |