Detailed information of SNP:
|
SNP ID:
sf0504038180(Gbrowse)
Chromosome: chr05 Position: 4038180 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 91.62% | 8.38% |
| All Indica | 772 | 87.95% | 12.05% |
| All Japonica | 492 | 97.56% | 2.44% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 365 | 90.14% | 9.86% |
| Indica II | 206 | 87.86% | 12.14% |
| Indica Intermediate | 201 | 84.08% | 15.92% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504038180 | C->T | LOC_Os05g07540(LOC_Os05g07540.1) | Non-Synonymous SNP |