Detailed information of SNP:
|
SNP ID:
sf0504049954(Gbrowse)
Chromosome: chr05 Position: 4049954 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 96.47% | 3.53% |
| All Indica | 781 | 100.00% | 0.00% |
| All Japonica | 456 | 89.69% | 10.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 100.00% | 0.00% |
| Indica II | 208 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 301 | 86.38% | 13.62% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 64 | 93.75% | 6.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504049954 | T->A | INTERGENIC | None |