Detailed information of SNP:
|
SNP ID:
sf0504188478(Gbrowse)
Chromosome: chr05 Position: 4188478 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 75.18% | 24.82% |
| All Indica | 798 | 68.42% | 31.58% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 51.73% | 48.27% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504188478 | T->C | INTERGENIC | None |