Detailed information of SNP:
|
SNP ID:
sf0504188922(Gbrowse)
Chromosome: chr05 Position: 4188922 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1317 | 91.95% | 8.05% |
| All Indica | 777 | 98.58% | 1.42% |
| All Japonica | 421 | 78.38% | 21.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 202 | 98.02% | 1.98% |
| Indica Intermediate | 201 | 99.00% | 1.00% |
| Temperate Japonica | 279 | 70.97% | 29.03% |
| Tropical Japonica | 79 | 96.20% | 3.80% |
| Japonica Intermediate | 63 | 88.89% | 11.11% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504188922 | G->T | INTERGENIC | None |