Detailed information of SNP:
|
SNP ID:
sf0504291228(Gbrowse)
Chromosome: chr05 Position: 4291228 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1179 | 62.51% | 37.49% |
| All Indica | 598 | 31.94% | 68.06% |
| All Japonica | 481 | 97.71% | 2.29% |
| Aus | 50 | 74.00% | 26.00% |
| Indica I | 332 | 40.06% | 59.94% |
| Indica II | 135 | 21.48% | 78.52% |
| Indica Intermediate | 131 | 22.14% | 77.86% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 79 | 92.41% | 7.59% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504291228 | T->C | LOC_Os05g07920(LOC_Os05g07920.1) | INTRON |