Detailed information of SNP:
|
SNP ID:
sf0504314592(Gbrowse)
Chromosome: chr05 Position: 4314592 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 61.68% | 38.32% |
| All Indica | 798 | 35.96% | 64.04% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 15.73% | 84.27% |
| Indica II | 212 | 54.72% | 45.28% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504314592 | C->T | INTERGENIC | None |