Detailed information of SNP:
|
SNP ID:
sf0504420587(Gbrowse)
Chromosome: chr05 Position: 4420587 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1324 | 57.33% | 42.67% |
| All Indica | 709 | 24.12% | 75.88% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 333 | 23.42% | 76.58% |
| Indica II | 191 | 24.61% | 75.39% |
| Indica Intermediate | 185 | 24.86% | 75.14% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504420587 | T->C | INTERGENIC | None |