Detailed information of SNP:
|
SNP ID:
sf0504422443(Gbrowse)
Chromosome: chr05 Position: 4422443 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 94.93% | 5.07% |
| All Indica | 768 | 91.67% | 8.33% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 359 | 90.25% | 9.75% |
| Indica II | 205 | 97.56% | 2.44% |
| Indica Intermediate | 204 | 88.24% | 11.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504422443 | T->C | LOC_Os05g08120(LOC_Os05g08120.1) | Synonymous |