Detailed information of SNP:
|
SNP ID:
sf0504424622(Gbrowse)
Chromosome: chr05 Position: 4424622 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 58.02% | 41.98% |
| All Indica | 797 | 96.86% | 3.14% |
| All Japonica | 480 | 1.25% | 98.75% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 78 | 3.85% | 96.15% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504424622 | A->G | INTERGENIC | None |