Detailed information of SNP:
|
SNP ID:
sf0504424630(Gbrowse)
Chromosome: chr05 Position: 4424630 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 58.03% | 41.97% |
| All Indica | 787 | 97.97% | 2.03% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 368 | 98.64% | 1.36% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 206 | 99.03% | 0.97% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 36 | 52.78% | 47.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504424630 | A->G | INTERGENIC | None |