Detailed information of SNP:
|
SNP ID:
sf0504428849(Gbrowse)
Chromosome: chr05 Position: 4428849 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.21% | 43.79% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504428849 | T->C | INTERGENIC | None |