Detailed information of SNP:
|
SNP ID:
sf0504429155(Gbrowse)
Chromosome: chr05 Position: 4429155 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1229 | 93.25% | 6.75% |
| All Indica | 614 | 86.81% | 13.19% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 284 | 76.41% | 23.59% |
| Indica II | 160 | 95.62% | 4.37% |
| Indica Intermediate | 170 | 95.88% | 4.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504429155 | G->A | INTERGENIC | None |