Detailed information of SNP:
|
SNP ID:
sf0504438892(Gbrowse)
Chromosome: chr05 Position: 4438892 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1330 | 81.50% | 18.50% |
| All Indica | 711 | 66.24% | 33.76% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 338 | 54.14% | 45.86% |
| Indica II | 186 | 79.57% | 20.43% |
| Indica Intermediate | 187 | 74.87% | 25.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504438892 | G->A | LOC_Os05g08150(LOC_Os05g08150.1) | Non-Synonymous SNP |