Detailed information of SNP:
|
SNP ID:
sf0504458891(Gbrowse)
Chromosome: chr05 Position: 4458891 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1361 | 54.89% | 45.11% |
| All Indica | 751 | 95.07% | 4.93% |
| All Japonica | 490 | 1.63% | 98.37% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 352 | 97.16% | 2.84% |
| Indica II | 203 | 90.64% | 9.36% |
| Indica Intermediate | 196 | 95.92% | 4.08% |
| Temperate Japonica | 330 | 0.61% | 99.39% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504458891 | C->T | LOC_Os05g08170(LOC_Os05g08170.1) | Synonymous |