Detailed information of SNP:
|
SNP ID:
sf0504460120(Gbrowse)
Chromosome: chr05 Position: 4460120 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 91.36% | 8.64% |
| All Indica | 794 | 96.22% | 3.78% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504460120 | A->G | LOC_Os05g08170(LOC_Os05g08170.1) | Synonymous |