Detailed information of SNP:
SNP ID:
sf0504466761(Gbrowse)
Chromosome: chr05 Position: 4466761 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1414 | 98.59% | 1.41% |
All Indica | 794 | 97.61% | 2.39% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 98.67% | 1.33% |
Indica II | 209 | 95.22% | 4.78% |
Indica Intermediate | 210 | 98.10% | 1.90% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0504466761 | C->T | LOC_Os05g08190(LOC_Os05g08190.1) | Non-Synonymous SNP |