Detailed information of SNP:
|
SNP ID:
sf0504475493(Gbrowse)
Chromosome: chr05 Position: 4475493 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1373 | 55.72% | 44.28% |
| All Indica | 754 | 85.15% | 14.85% |
| All Japonica | 497 | 7.44% | 92.56% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 354 | 88.42% | 11.58% |
| Indica II | 203 | 81.28% | 18.72% |
| Indica Intermediate | 197 | 83.25% | 16.75% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504475493 | G->A | LOC_Os05g08220(LOC_Os05g08220.1) | INTRON |