Detailed information of SNP:
|
SNP ID:
sf0504490165(Gbrowse)
Chromosome: chr05 Position: 4490165 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 72.73% | 27.27% |
| All Indica | 756 | 64.81% | 35.19% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 354 | 69.49% | 30.51% |
| Indica II | 200 | 56.00% | 44.00% |
| Indica Intermediate | 202 | 65.35% | 34.65% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504490165 | T->G | INTERGENIC | None |