Detailed information of SNP:
|
SNP ID:
sf0504496493(Gbrowse)
Chromosome: chr05 Position: 4496493 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 62.78% | 37.22% |
| All Indica | 780 | 45.26% | 54.74% |
| All Japonica | 488 | 95.90% | 4.10% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 367 | 57.49% | 42.51% |
| Indica II | 212 | 23.11% | 76.89% |
| Indica Intermediate | 201 | 46.27% | 53.73% |
| Temperate Japonica | 326 | 99.69% | 0.31% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504496493 | A->G | LOC_Os05g08240(LOC_Os05g08240.1) | Non-Synonymous SNP |