Detailed information of SNP:
|
SNP ID:
sf0504496664(Gbrowse)
Chromosome: chr05 Position: 4496664 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 76.16% | 23.84% |
| All Indica | 778 | 58.48% | 41.52% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 366 | 67.76% | 32.24% |
| Indica II | 207 | 31.40% | 68.60% |
| Indica Intermediate | 205 | 69.27% | 30.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504496664 | C->T | LOC_Os05g08240(LOC_Os05g08240.1) | INTRON |