Detailed information of SNP:
|
SNP ID:
sf0504497743(Gbrowse)
Chromosome: chr05 Position: 4497743 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 50.14% | 49.86% |
| All Indica | 772 | 14.38% | 85.62% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 361 | 13.02% | 86.98% |
| Indica II | 209 | 11.48% | 88.52% |
| Indica Intermediate | 202 | 19.80% | 80.20% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504497743 | C->T | LOC_Os05g08240(LOC_Os05g08240.1) | INTRON |