Detailed information of SNP:
|
SNP ID:
sf0504497796(Gbrowse)
Chromosome: chr05 Position: 4497796 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 52.33% | 47.67% |
| All Indica | 781 | 89.50% | 10.50% |
| All Japonica | 495 | 0.81% | 99.19% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 364 | 90.93% | 9.07% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 206 | 84.95% | 15.05% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 92 | 1.09% | 98.91% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504497796 | G->A | LOC_Os05g08240(LOC_Os05g08240.1) | INTRON |